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LINUX Signals. SIGABRT: 6 error exit

Time:09-22

When I was assembled from flye, found & lt; Signals. SIGABRT: 6 & gt; Error, could you tell me what is the reason,


0% 00:08:07 [2019-10-30] ERROR: Caught unhandled exception: STD: : bad_alloc
00:08:07 [2019-10-30] ERROR: flye to assemble (+ 0 x532b6 x5566f671b2b6 [0])
00:08:07 [2019-10-30] ERROR:/home/spiders/soft/miniconda3 envs/python37/bin/../lib/libstdc++. So. 6 (+ 0 xabf47) x7f6c49aa7f47 [0]
00:08:07 [2019-10-30] ERROR:/home/spiders/soft/miniconda3 envs/python37/bin/../lib/libstdc++. So. 6 (+ 0 xabf7d) x7f6c49aa7f7d [0]
00:08:07 [2019-10-30] ERROR:/home/spiders/soft/miniconda3 envs/python37/bin/../lib/libstdc++. So. 6 (__cxa_rethrow + 0) x7f6c49aa815a [0]
00:08:07 [2019-10-30] ERROR:/home/spiders/soft/miniconda3 envs/python37/bin/../lib/libstdc++. So. 6 (_Znwm + 0 x52) x7f6c49aa8522 [0]
00:08:07 [2019-10-30] ERROR: flye to assemble (+ 0 x4f387 x5566f6717387 [0])
00:08:07 [2019-10-30] ERROR: flye to assemble (+ 0 x441cf x5566f670c1cf [0])
00:08:07 [2019-10-30] ERROR: flye to assemble (+ 0 x176a5 x5566f66df6a5 [0])
00:08:07 [2019-10-30] ERROR:/home/spiders/soft/miniconda3 envs/python37/bin/../lib/libstdc++. So. 6 (+ 0 xc819d) x7f6c49ac419d [0]
00:08:07 [2019-10-30] ERROR:/lib64/libpthreads. So. 0 (+ 0 x7dd5 x7f6c49454dd5 [0])
00:08:20 [2019-10-30] the ERROR: the Command '[' flye to assemble', '- reads',' m64066_190916_034435. Fasta, m64067_190909_054802. Fasta ', '- out - asm', '/home/spiders/data/nephila/00 - assembly/draft_assembly fasta', '- genome - size', '2000000000', 'config', '/home/spiders/soft/miniconda3 envs/python37/lib/python3.7/site - packages/flye/config/bin_cfg/asm_raw_reads CFG', '- log', '/home/spiders/data/nephila/flye log', '- threads',' 20 ', '- min - ovlp', '3000', '- kmer', '17'] 'died with & lt; Signals. SIGABRT: 6 & gt; .

CodePudding user response:

I also met the same problem. Ask teacher you have to solve?

CodePudding user response:

With the teacher said the likelihood is out of memory, thread down to try, I have a try,

CodePudding user response:

Baidu search "ERROR: Caught unhandled exception: STD: : bad_alloc"
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