ImportError: cannot import name 'Sized' from 'collections'-CodePudding

I am trying to use one package that somebody developed on GitHub called PyLipid. The first parts of the code are importing various packages, but I am continuously getting this error, showed bellow:

%matplotlib inline
import pylipid
import collections 
from pylipid.api import LipidInteraction
# print(pylipid.__version__) # make sure pylipid version is later than 1.4

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
Input In [37], in <cell line: 4>()
      2 import pylipid
      3 import collections 
----> 4 from pylipid.api import LipidInteraction

File ~/miniconda3/envs/work/lib/python3.10/site-packages/pylipid/api/__init__.py:32, in <module>
      1 ##############################################################################
      2 # PyLipID: A python module for analysing protein-lipid interactions
      3 #
   (...)
     14 # copies or substantial portions of the Software.
     15 ##############################################################################
     17 r"""
     18 PyLipID class
     19 =============
   (...)
     29 
     30 """
---> 32 from .api import LipidInteraction

File ~/miniconda3/envs/work/lib/python3.10/site-packages/pylipid/api/api.py:30, in <module>
     28 import pandas as pd
     29 from tqdm import trange, tqdm
---> 30 from p_tqdm import p_map
     31 from ..func import cal_contact_residues
     32 from ..func import Duration

File ~/miniconda3/envs/work/lib/python3.10/site-packages/p_tqdm/__init__.py:1, in <module>
----> 1 from p_tqdm.p_tqdm import p_map, p_imap, p_umap, p_uimap, t_map, t_imap
      3 __all__ = [
      4     'p_map',
      5     'p_imap',
   (...)
      9     't_imap'
     10 ]

File ~/miniconda3/envs/work/lib/python3.10/site-packages/p_tqdm/p_tqdm.py:11, in <module>
      1 """Map functions with tqdm progress bars for parallel and sequential processing.
      2 
      3 p_map: Performs a parallel ordered map.
   (...)
      8 t_imap: Returns an iterator for a sequential map.
      9 """
---> 11 from collections import Sized
     12 from typing import Any, Callable, Generator, Iterable, List
     14 from pathos.helpers import cpu_count

ImportError: cannot import name 'Sized' from 'collections' (/home/srdjanm/miniconda3/envs/work/lib/python3.10/collections/__init__.py)

Does anybody know how to solve this error? I have also posted the question on the webpage in github but it might take a while for someone to respond, also this seems to me like a more general problem. Is this the package or "python version" related issue?

CodePudding user response：

You may want to modify one line in the library to it works. It was created a pull request in github of p_tqdm library

In file ~/miniconda3/envs/work/lib/python3.10/site-packages/p_tqdm/p_tqdm.py modify line 11 from

from collections import Sized

from collections.abc import Sized