I have over 200 csv files containing temperature data from iButton data loggers. The csv files that are created in onewireviewer have 14 rows of data that I need to get rid of in all of the csv files (see the image below) so that I can then merge csv files based on the column headings.
Id love to be able to automate it in some way as I have around 70 folders (basically one folder per location) with 2-3 csv files from onewireviewer in each folder.
Ive tried messing around with bits of code Ive found online but I couldnt get anything to work and Im now just incredibly frustrated. Any and all help is greatly appreciated!
If it helps I did try running the tidy verse code found here Remove certain rows and columns in multiple csv files under the same folder in R but I get this error:
Column specification -----------------------------------------------------
Delimiter: "," chr (1): 1-Wire/iButton Part Number: DS1921G-F5
i Use spec()
to retrieve the full column specification for this data.
i Specify the column types or set show_col_types = FALSE
to quiet this message.
Error: Can't subset columns that don't exist.
x Locations 2, 3, 4, 5, 6, etc. don't exist.
i There are only 1 column.
Run rlang::last_error()
to see where the error occurred.
In addition: Warning messages:
1: One or more parsing issues, see problems()
for details
2: One or more parsing issues, see problems()
for details
CodePudding user response:
try something like
library(data.table)
rbindlist(lapply(list.files(...), fread, skip = 14, ...), ...)
where ...
are function's arguments.
check out ?list.files
, ?data.table::fread
and ?data.table::rbindlist
to find out more about them.