I am currently running a mixed effects model using lmer in which random slopes and correlated random intercepts are estimated. After fitting the model I would like to plot the result allowing from random slopes and intercepts as well as one overall fixed line. How I currently implement is this way:
library(lmer)
library(sjPlot)
df <- read_csv("anonymized_test.csv")
m1 <- lmer("DV ~ IV (1 IV| iso)", df)
plot_model(m1, ,type="pred",
terms=c("IV","iso"),
pred.type="re", ci.lvl = NA)
Which is not what is expected as we would expect some negative and positive slopes in addition to the random intercepts according to the extracted random effects of the model
The problem is that sjPlot seems to only plot the random intercepts. Looking at an older vignette of sjPlot this seems to have been implemented in a deprecated function (see
However, I also get the random slopes using sjPlot
. Not sure what went wrong, maybe you are using outdated software?
sjPlot::plot_model(fm1, type="pred", terms=c("Days","Subject"), pred.type="re", ci.lvl=NA)
# Warning message:
# In RColorBrewer::brewer.pal(n, pal) :
# n too large, allowed maximum for palette Set1 is 9
# Returning the palette you asked for with that many colors