For example I want to split a dataframe with 1,079,882 rows starting from 1,048,575 and follow by the next 1,048,575
I tried to do something like this
x<-split(df, rep(1:1048575, 1048575))
list2env(x,envir = .GlobalEnv)
but it does not work. Based on what I want to do I should get 2 dataframes. If my dataframe had 2,097,160 I should have three, First two with 1,048,575 rows and the third with 5 rows.
CodePudding user response:
I'll demonstrate on something a little smaller than 1e6 rows: mtcars
.
Let's say you want the frame split into no more than 10 rows each. Since it has 32 rows, this means we should have three frames with 10 rows each and one frame with 2 rows.
We'll use the %/%
integer (floor) division operator. It's important to note that we need the starting to start at 0
instead of R's default of 1
, so we will subtract 1.
(seq_len(nrow(mtcars)) - 1) %/% 10
# [1] 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 3 3
From here, just split on that:
out <- split(mtcars, (seq_len(nrow(mtcars)) - 1) %/% 10)
sapply(out, nrow)
# 0 1 2 3
# 10 10 10 2
out
# $`0`
# mpg cyl disp hp drat wt qsec vs am gear carb
# Mazda RX4 21.0 6 160.0 110 3.90 2.620 16.46 0 1 4 4
# Mazda RX4 Wag 21.0 6 160.0 110 3.90 2.875 17.02 0 1 4 4
# Datsun 710 22.8 4 108.0 93 3.85 2.320 18.61 1 1 4 1
# Hornet 4 Drive 21.4 6 258.0 110 3.08 3.215 19.44 1 0 3 1
# Hornet Sportabout 18.7 8 360.0 175 3.15 3.440 17.02 0 0 3 2
# Valiant 18.1 6 225.0 105 2.76 3.460 20.22 1 0 3 1
# Duster 360 14.3 8 360.0 245 3.21 3.570 15.84 0 0 3 4
# Merc 240D 24.4 4 146.7 62 3.69 3.190 20.00 1 0 4 2
# Merc 230 22.8 4 140.8 95 3.92 3.150 22.90 1 0 4 2
# Merc 280 19.2 6 167.6 123 3.92 3.440 18.30 1 0 4 4
# $`1`
# mpg cyl disp hp drat wt qsec vs am gear carb
# Merc 280C 17.8 6 167.6 123 3.92 3.440 18.90 1 0 4 4
# Merc 450SE 16.4 8 275.8 180 3.07 4.070 17.40 0 0 3 3
# Merc 450SL 17.3 8 275.8 180 3.07 3.730 17.60 0 0 3 3
# Merc 450SLC 15.2 8 275.8 180 3.07 3.780 18.00 0 0 3 3
# Cadillac Fleetwood 10.4 8 472.0 205 2.93 5.250 17.98 0 0 3 4
# Lincoln Continental 10.4 8 460.0 215 3.00 5.424 17.82 0 0 3 4
# Chrysler Imperial 14.7 8 440.0 230 3.23 5.345 17.42 0 0 3 4
# Fiat 128 32.4 4 78.7 66 4.08 2.200 19.47 1 1 4 1
# Honda Civic 30.4 4 75.7 52 4.93 1.615 18.52 1 1 4 2
# Toyota Corolla 33.9 4 71.1 65 4.22 1.835 19.90 1 1 4 1
# $`2`
# mpg cyl disp hp drat wt qsec vs am gear carb
# Toyota Corona 21.5 4 120.1 97 3.70 2.465 20.01 1 0 3 1
# Dodge Challenger 15.5 8 318.0 150 2.76 3.520 16.87 0 0 3 2
# AMC Javelin 15.2 8 304.0 150 3.15 3.435 17.30 0 0 3 2
# Camaro Z28 13.3 8 350.0 245 3.73 3.840 15.41 0 0 3 4
# Pontiac Firebird 19.2 8 400.0 175 3.08 3.845 17.05 0 0 3 2
# Fiat X1-9 27.3 4 79.0 66 4.08 1.935 18.90 1 1 4 1
# Porsche 914-2 26.0 4 120.3 91 4.43 2.140 16.70 0 1 5 2
# Lotus Europa 30.4 4 95.1 113 3.77 1.513 16.90 1 1 5 2
# Ford Pantera L 15.8 8 351.0 264 4.22 3.170 14.50 0 1 5 4
# Ferrari Dino 19.7 6 145.0 175 3.62 2.770 15.50 0 1 5 6
# $`3`
# mpg cyl disp hp drat wt qsec vs am gear carb
# Maserati Bora 15.0 8 301 335 3.54 3.57 14.6 0 1 5 8
# Volvo 142E 21.4 4 121 109 4.11 2.78 18.6 1 1 4 2
There are several advantages of this technique:
- it is memory-efficient in that the
seq_len(.)
only counts as high as your frame has rows; it does not try to dorep(highnumber, highnumber)
, which will usually exceed R's memory when you have1e6
or so rows; - it directly controls which row goes into which group
- if you prefer your names to be 1-based, then add one, as in
(seq_len(.)-1) %/% 10 1
; if you want the names to be something else,names(out) <- c(...)
works, too
Another point: it is often much better in a sense to keep this in a list
instead of transferring it to the global environment: once you become more comfortable with lapply
and friends, it keeps your environment uncluttered, allows you to repeat one task for all frames in one motion (instead of copy/paste for each named variable), and is a very "canonical" approach to dealing with data (in R). See https://stackoverflow.com/a/24376207/3358227.
CodePudding user response:
You could do it this way:
- Define the chunk of rows
- define the lengths of rows
- define the amount of chunks in your dataframe
- split the dataframe by the defined amount
chunk <- 1048575
n <- nrow(df)
r <- rep(1:ceiling(n/chunk),each=chunk)[1:n]
d <- split(df,r)
d