I am trying to run someone else's code, but cannot find what package contains the function vm()
. It is used below with ID
which is a column in data
and GRM
which is a genomic relationship matrix.
model10.asr <- asreml(fixed = SPIG_NOSE ~ TypeOfBirthMod:TypeOfRearing ContempGrp Sex_Corrected Het,
random = ~ vm(ID, GRM),
na.action = na.method(x = "include", y = "include"),
keep.order = TRUE,
dense = list(SheepGeneticsID = GRM),
data = data,
workspace=512e06)
I have tried searching to packages, and only found nomcluster
which didn't work.
CodePudding user response:
I don't think it's a function per se, it's part of the syntax of the ASREML-R
package, which is commercial (not open-source). You can find more information about it here: https://asreml.kb.vsni.co.uk/ . I have no idea if they have cheap student or academic licenses.
Some of their documentation is online, although I don't know if it will completely answer your question (e.g. search https://asreml.kb.vsni.co.uk/knowledge-base/asreml/ for "vm").
CodePudding user response:
The vm package is from thestatsmodelslibrary in R.