Hi would to create a barplot like this
but the bars should by filled by the values of this plot, leaving the rest in a color like gray or black:
To produce the barplots I used:
> table
Var1 Freq
1 H3K27ac 72
2 H3K27me3 72
3 H3K36me3 72
4 H3K4me1 72
5 H3K4me2 66
6 H3K4me3 72
7 H3K9ac 66
8 H3K9me3 71
> table_filt
Var1 Freq
1 H3K27ac 31
2 H3K27me3 72
3 H3K36me3 0
4 H3K4me1 71
5 H3K4me2 66
6 H3K4me3 72
7 H3K9ac 60
8 H3K9me3 1
and the code is:
table%>%
ggplot(aes(Var1, Freq, fill = Var1))
geom_col()
scale_fill_manual(values = colours)
table_filt%>%
ggplot(aes(Var1, Freq, fill = Var1))
geom_col()
scale_fill_manual(values = colours)
The colour vector is:
colours
H3K27ac H3K27me3 H3K36me3 H3K4me1 H3K4me2 H3K4me3 H3K9ac H3K9me3
"mediumvioletred" "#E69F00" "#56B4E9" "#009E73" "#F0E442" "#0072B2" "firebrick4" "aquamarine"
I appreciate any suggestion.
CodePudding user response:
Are you looking for something like this?
library(ggplot2)
ggplot(table, aes(Var1, Freq))
geom_col(fill = "gray75")
geom_col(data = table_filt, aes(fill = Var1))
scale_fill_brewer(palette = "Set1")