Perform rowwise non-vectorized function on a combination of columns in a data.table (R)-CodePudding

I have a very large data.table in R (~200,000) entries, and I want to perform a non-vectorized function to each row. This function needs inputs from two columns of this data.table. The value of one column is linked to another list with each member containing ~1,000,000 numbers. Here is a simplified case with mtcars

#setup a fake list for my function call    
gears <- mtcars %>% arrange(gear) %>% pull(gear) %>% unique
gear_lst <- lapply(gears, function(x){rnorm(1000000, mean = x**2, sd = x*2)}) %>% setNames(.,gears)  

#make a mega data table     
mega_mtcars <- sapply(mtcars, rep.int, times = 10000) %>% as.data.table

#this is the function I want to call    
my_function <- function(x,y){
    sum(x > gear_lst[[y]])
}

# rowwise call is low
out <- mega_mtcars %>% mutate(gear_c = as.character(gear)) %>% rowwise %>% mutate(out = my_function(mpg, gear_c))

One thing I tried is to add a nested column of gear_lst for each gear entry, so that I would be able to perform vectorized function. However, because the list is large, the memory failed to created such a data structure.

Update: @akrun provided a few ways, I wasn't able to test them with my original mega_mtcars because it's too big. I sized it down 100 fold and here is the performance so far (it doesn't seem any improvement over the original rowwise method):

#make a smaller mega_mtcars
mega_mtcars <- sapply(mtcars, rep.int, times = 100) %>% as.data.table

# use rowwise from dplyr
system.time(mega_mtcars %>% rowwise %>% mutate(out = my_function(mpg, as.character(gear))))
   user  system elapsed 
  8.086   2.860  10.941 
    
# use Map with data.table
system.time(mega_mtcars[, out := unlist(Map(my_function, x = mpg, y = as.character(gear)))])
  user  system elapsed 
  7.843   2.815  10.654 
    
# use dapply from collapse package
system.time(dapply(mega_mtcars[, .(mpg, gear)], MARGIN = 1, function(x) my_function(x[1], as.character(x[2]))))
   user  system elapsed 
  7.957   3.167  11.127

Any other ideas?

CodePudding user response：

With data.table, rowwise can be achieved by grouping over the row sequence

library(data.table)
mega_mtcars[, out := my_function(mpg, as.character(gear)) , 
       by = 1:nrow(mega_mtcars)]

CodePudding user response：

does sorting the values in gear_lst help?