Fastqc 8 - o - t outputPATH inputPATH + file
# fastqc configured environment variables; T is to handle the number of files at the same time - o is the output directory
For example fastqc - t eight o/media/rock/rawdata/media/rock/rawdata fasqfile/*. Fast. Gz
# if you don't want to see the analysis process can add - q into quiet mode