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When making is choosing analysis, sequence of termination codon how purify?

Time:02-06

In use, or paml datamonkey do is choosing analysis, require the nucleic acid is a multiple of 3 and there can be no termination codon, I'm going to use the 5 groups compare mitochondrial genome protein-coding sequences, termination codon is always a sequence of tip, and the sequence in multiples of three, there is no way for the subsequent analysis, also please great god taught how to correct the comparison
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