I was trying to create a barplot using a column of dataframe to fill the bars, but the bars result empty. the head of my df dataframe (13.000 rows) is this:
head(metadata)
membership condition timepoint rep barcode
AAACAGCCACCTGCTC-1 3 WT d3 r1 AAACAGCCACCTGCTC-1
AAACATGCAGGAATCG-1 4 WT d3 r1 AAACATGCAGGAATCG-1
AAACCAACAATATAGG-1 3 KO d3 r1 AAACCAACAATATAGG-1
AAACCGAAGCGAGTAA-1 3 KO d3 r1 AAACCGAAGCGAGTAA-1
AAACCGAAGCGATAAG-1 3 KO d5 r1 AAACCGAAGCGATAAG-1
AAACCGAAGGATAAAC-1 4 KO d5 r1 AAACCGAAGGATAAAC-1
What I've tried is:
ggplot(metadata, aes(x=treatment, fill=membership)) geom_bar(position = "fill")
theme(axis.text.x=element_text(angle=45, hjust=1)) geom_hline(yintercept = 0.50)
while I was expecting the bars filled by the distributions of clusters (membership) in the two conditions. Here I plot an example of what I want to do:
CodePudding user response:
It could be because the membership column is numerical, make sure it to be factor/character.