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AVR use ADC, unused pins

Time:11-17

Just learning avr, use atmega48 to do analog-to-digital conversion, use 2 road, there is a problem right now, there are 7 road atmega48 adc input, so after I used 2 pins to several other road used for other purposes, for example, used to drive stepper motor or do a keyboard, could you tell me how to set up, which will affect the two way adc work? thank you
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